LOCUS hSHP3\Pseu 11001 bp DNA 20-AUG-2003 SOURCE ORGANISM COMMENT This file is created by Vector NTI suite COMMENT ORIGDB|GenBank COMMENT VNTDATE|271809120| COMMENT VNTNAME|hSHP3 Pseudogene Annotation| COMMENT VNTAUTHORNAME|Jannik N Andersen| COMMENT VNTAUTHOREML|jannik@noergaardandersen.com| COMMENT VNTAUTHORWWW|http://ptp.cshl.edu & http://science.novonordisk.com/ptp| FEATURES Location/Qualifiers exon 2269..2391 /vntifkey="61" /label=Exon\2\(Phase\1,\Phase\2) exon 3396..3591 /vntifkey="61" /label=Exon\4\(Phase\1,\Phase\0) exon 2130..2213 /vntifkey="61" /label=Exon\1\(Phase\0)\? exon 3681..3779 /vntifkey="61" /label=Exon\5\(Phase\0,\Phase\0) exon 6530..6628 /vntifkey="61" /label=Exon\9B\(Phase\0,\Phase\0,\21%,\61%) 5'UTR 2130..2204 /vntifkey="52" /label=5'\UTR\? exon 4331..4442 /vntifkey="61" /label=Exon\6\(Phase1,\Phase\0) exon 8748..8906 /vntifkey="61" /label=Exon\14\(Phase\1,\Phase\2)\? exon 2624..2755 /vntifkey="61" /label=Exon\3B\(Phase\1,\Phase\2) exon 5551..5647 /vntifkey="61" /label=Exon\7\(Phase\0,\Phase\1) exon 6851..6982 /vntifkey="61" /label=Exon\10\(Phase\0,\Phase\0) exon 7556..7710 /vntifkey="61" /label=Exon\11\(Phase\0\Phase\2) misc_feature 7900..7967 /vntifkey="21" /label=Exon12\(Phase\1,\Phase\1) exon 8188..8314 /vntifkey="61" /label=Exon\13\(Phase\2,\Phase\2) misc_feature 8015..8085 /vntifkey="21" /label=Repetitive\DNA exon 5849..5931 /vntifkey="61" /label=Ex\8B\(Phase\1\Phase\?\25%\0%) exon 5866..5915 /vntifkey="61" /label=Ex\8A\(ORF\Phase\2,\Phase\0,\19%,\93%) misc_feature 5849..5919 /vntifkey="21" /label=Ex\8C\(Phase\1,\Phase\1,\25%\70%) insertion_seq 5861..5862 /vntifkey="14" /label=TT\insertion\(when\removed\ORF\is\recovered) exon 6459..6628 /vntifkey="61" /label=Exon\9A\(By\SHP2\homology) CDS 6515..6628 /vntifkey="4" /label=CDS\Frame\2 CDS 6459..6514 /vntifkey="4" /label=CDS\Frame\3 CDS 2658..2753 /vntifkey="4" /label=CDS\Frame1 exon 2561..2755 /vntifkey="61" /label=Ex\3A\(Phase\1\Phase\2) insertion_seq 6513..6514 /vntifkey="14" /label=TG\insertion\(When\removed\ORF\is\recovered) BASE COUNT 1805 a 3433 c 3650 g 2113 t ORIGIN 1 ccccgacgtc cgtggcaacc ctgacagcca agtcctccgt gggcttggag ggcgggacac 61 ggctctggag atgagggaga ggacgggccg tgccgaccgg caccgcggtg ttcctgagca 121 gtggcaccgt ggctgttgct gaattttatt attgttaatt aatttattta tttttatttt 181 tgatactgag tttttctctt gttgcccagg ctggagtgca gtggcgagat ctcggctcac 241 cgcaacctcc gcctcccggg ttcaagcgat tctcctgcct cagcctcccg tgtagctggg 301 attacaggtg cccatgacca cacccggata attttgtatt tttagtagag acggggtttc 361 accatgttgg tcaggctggt ctcaaactcc tgacctcagg tgatgcgcct gcctcagcct 421 cccaaagtgc tgggatttca ggcatgagcc atcgcacccg gccatgaatt ttaattcatt 481 cctatttaca aatcacacag ccatacaaac ttcttccaga agttgtgctc agaggggagc 541 agaggggcag gagctgcaag gagtggaggc agggcccgaa ggaggaggag gagctggggc 601 cccgggagag ggacctggcc agggtgggct ggagccgggg atggggtccc cagggggacc 661 agccaggacc tgtgggtgct gcagaggagg ggagatcttg gctccattct caggggtgaa 721 agcctgtgga ggcctttatt ttttatttct tcttaagtga gatgaggtct ggctatgttg 781 cccaggctgg tcttgaactc ctgggctcaa gcaatccacc cgcctcctga gtaattggga 841 ttataggcat gagcctggtc atggaggcct ttaacagaga ctgcggtgag gcctccattc 901 tagaaagagc cctgcagctg ccctttgtgg ggcagagggg gcaggaccgc cctcaacctt 961 cctcctcctc tggaccagcc atgggggccg gagcaaggtc tgcccagggc acagcaaccc 1021 ccacccattc gtgcacaggt tatgattcca ctgacaacca ggccgggcca gcgtggggcg 1081 gaggtcctag agccagcagg ccccacctgg gtatcatcta tgcagccagg agatgcccaa 1141 gagccaggtg tccagaagcc gcccctgtgt ggacagcaca gctggggaag acagagggct 1201 gggggagccc cacgtcctca gttccttcct ctgccgcctc cctccctccc tcccttgtcc 1261 ccgttccctc cgtccctctc ccccttcctt ccctccctcc ctcaccacca ttccctccct 1321 cccacatccc cttccctccc ctcttccttc cctccctctc acaccccttc cctccctccc 1381 tccctccctc cctcagtcac tcacgggtgt ggctcttttt tgctgacatt ctgggctctg 1441 gggctgccgc ctgagtacaa tgtagtcctg agctccggag tccagtgcca caaaagtaag 1501 gagcagttgt gatctcggac gtgggctccg gggcagccct gacctcatgg ggggctgcag 1561 actaggaagg tcctgggacg ggggggctgt tcaccaggaa ggggcagggc tgcagcctca 1621 gcctcccctc cagatgccgg cagcaccagc ctctgcctgc atggggccgc gaggtttgca 1681 gtgacatccc ccgagcttcc tgacctgccc cggacacgga gcacggctcc caggggccgc 1741 acaggcaccc gctggcctct cggcccctcc ctgtgcacca ccccctcctc cccccgaccc 1801 ccatccctct actgagtgtc tcaattccag tgttatggac ctgggacgcc acagtgcggg 1861 gaacagcttc tgccctctgg gagataagaa cccgtcgtca ggcagctggg ctgctgaaac 1921 agtgaccata agctgggcgg gcaggcgctc cttccctcag ctctggaggc tggaagtccg 1981 agatcctggc cgtggaggct gggaggggtg gagtggacgg ggctgctgac agcctcgggg 2041 gcgtgtggag aaggagggag ccccagtggc cccaggccct gccacttggg ggagaattcc 2101 agcccctctg tgtccctggg accccacagc ccctggccag tggccattcc cggcttcgag 2161 cacagtggcc tcaagccacc atcgtgggtg ttaccgtgga aacaatgagg gaggtttgtg 2221 tggggccaga ttcctcctct gggcactgac ctgctctccc cactccaggt ggtttcaccc 2281 caacatcagc agggtggagg cggagaagct gttcctatcc agaggtcagc gtggggactt 2341 ccttgccagg cccagtgaga gcagcccggg gggcttcacg ctgtccgtca ggtgggtggg 2401 ccctggctgg gcatggacag ggtctggttg aaggcctcct ggaggaccgg tgggcagctt 2461 cctggacacg aggacttggt gcggggggcc gatgccctgg gaaggtggtg agagttggac 2521 gtggtgctgg gcggtctctg ggcaggaagg aactatttag agaggccctt ggggagggct 2581 cattgagtca ggggctcagc aggacccttt cctcccctgt gagggccctg gggacaggca 2641 gggcctccgt ggctgcgacc gtgttgccag agcctggggg tgcagctggg gagtgcagcg 2701 gggttcccat tgagctctgg tacccgctgg gctgccagga ccccgcgttg gagtggtgag 2761 ccctggccca gcatccgcgt gtcagcacac gtgtgtacgt gtgcatgtgt gtgttcgcgt 2821 gtccatgtgt gttcatgtgt gtgcgtgtgc atgtgtgtgt gtgtgtgtgt gcgtgtgcct 2881 gcatcctgag ggacggcgtc tgctaagcac tggttcaggg cacagggtcc tgcacctgcc 2941 tccctcaggc ctccttcctt caggtctcag gcactggagt ccagggtgac tcagggaagc 3001 cggtgcctcc cctggcccca tccctgccct cctggctggt accctgggct gagctggttc 3061 ctccagcctc agtttcccca ctgcagcggg ctgcatctgc agagaaggag acctggtctg 3121 gggaggcccc tggcccctcc ttgctgagga ccaggccgcc acctggtggc cgcccgcccc 3181 tgcagcgccc gcctgcctcc tgccggctcc tgggtggggc gagggccaga aaggcgagca 3241 gagcagctct ggggcccggg tggtggtgct gcctggaccc ccaaggtctg cgtatgtctc 3301 gctaagcctt ctgccctatc cgtgtgggtc tctccccctc acctggccag gccgtggcct 3361 ccagcctcac ctgtgctcgc ctgtgcctgg cccaggtggt accacgggcg cctgtctggc 3421 aaggaggctg agaagctgct gctgcagaag gggcatccgg gcagcttcct ggtgcacatg 3481 agtcagagcg atcctggggg cttcccgctg tcagcgctga cgcaagggtg ggacgaggcg 3541 cagggctcag gccgccagcc acaggtcacg cacatcatga ctcactccca ggtgggaggg 3601 ggcggcgagc tggggcggcc tctgggaagg gcgggcggcc ttggccaggc ccctcaccgc 3661 cacccccacg gccggatgag aagtgggaga cggggagcgt tttgacaccc tcggagaccc 3721 ggtgtagcag gaagagccca ttgatgggga aggtgggggc ggttgtgcac ctcaagcagg 3781 taaaagcccc tccacaggca ccagggccgt gggcacagcc tcacccagga aagcagctgg 3841 gggtccactg ggctcaggga agaccccctg ccagggagac cccaggcgcc tgaatggcca 3901 cgggaaggaa aacctaccag cccctccgtg tgtcctcctg gcacatggcg acctccatga 3961 cccgacgagg gtgcggggcc cggggcaggg tggccaggtg cgggggtgcg gggcccgggg 4021 cagctgccct cggtgggagg ggtgtggtgt ggtctgcggg gccctggggg ggtgtggtgg 4081 ggtctgcggg gccctggggg ggtgtggtgt ggtctgcggg gccctggggg ggtgtggtgg 4141 ggtctgcggg gccctggggg ggtggggtct gcggggccct gggggtgttg tggtggggtc 4201 tgcggggccc tgggggggtg tggtggggtc tgcggtgccc tcggggggtg tggtggggtc 4261 tgcggggccc tgggggggtg tggtggggtc tggggggccc taagcttaga tgcaggtctc 4321 tccctggcag cccctcaagg ccacgaggat cagtgctcgg agcctggagg gctgtgtgca 4381 ggagtagcag ggccactgat gccagcggga aggccaggca gggcttctgg gtggagttca 4441 aggtgcatcc tgaccgctgt caccttcaga ctctgtcccc tggggctggg gcaagtgccc 4501 gatgggagcg cagggtctgg gactgtaggg tccagcccta cggagcttag caggtgttct 4561 ccccgtgtgt ggagatgaga gattgtaata aataaagaca caagacaaag agataaagag 4621 aaaacagctg ggccccgggg accactacca caaagacacg gagaccggta gtggccctga 4681 acggctgggc tcgctgatat ttattgcata caagacaagg gggcaggata aggagggtca 4741 gtcttctaag tgattgacaa ggtgaagcaa gtcacgtgat cacaggacag cgggcccttc 4801 cctcttaggt agctgaagca gagagagaag gcggcaggca tcagcgtttt cttctatgaa 4861 cttataagat caaagacttt aagactttca ctatttcttc taccgctatc tactacgaac 4921 ttcaaagagg aaccaggagt acggaaggag catgaaagtg gacaaggaac gtgaccattg 4981 aagcaccaca gggaggggtt caggcctccg gatgactgca ggcaggcctg ggtaacatcc 5041 agcctcccac aagaagctgg tggagcagag cgttccctga ctcctccaag gaaaggagac 5101 tccctttccc ggtctgctca gtaacgggtg ccttcccaga cactggcgtt accgcttgac 5161 caaggggccc tcaagcggcc cttatgcggg catgacagaa ggctcccctc ttgccttcta 5221 ttcacttctc acaatgtccc ttcagcacct gaccctatac ctgccggtta ttcctaggtt 5281 atattattaa tgcaacagag taatattaaa agctaatgat taataatgtt tataataatg 5341 atggataatt gttcatgatc atcgctgtat ctaatttgta ttatgactat tcttattcta 5401 ttttctttat tatactgaaa cagtttgtgc cttcagtctc ttgcctcggc acctaggtac 5461 tcttccgccc acacgggacg ggctgggggt ggccatctcg ggctctggga aggggccggg 5521 gctgtgagct gaaggctcca tcacctccag atgctgcagc agcaggaatg ccggttcctg 5581 taccctcgga aggaggggca gagtgtggag aacaagccca agaatcacta caagaacatc 5641 cttccctgtg agggcggagg ccagggcgtc acccgtcggg cctgggggag gtggggggca 5701 ggccgagcat ctgccaccgc tgacctgagg ctcccccttg cataccctgg accctccatc 5761 tctgctcacc acagggtctg cgggcaaaga ggcagggtga ggcccacgag ctgtgccctg 5821 gagaactgag cggcacctcc cttcccagtt gatgctaccc ttgagtcatc ctgctcaacg 5881 aggatgacag cgggcccgga gccgactaca tcagggtggg tgtgtgcggg aggcggggcc 5941 tgggcccatt gctcctgggg ggctcaggaa gaaccagggt ccccaaggga ggggtgggcg 6001 gcagtctcca aggggtcctc agagaggctg gacgggcatt ggtcctcagc cccttgctgg 6061 cctggagtga ggagtgtgtt taagccacca gggctctttg cataatattt gtgtgtcgtt 6121 tgcatatcat ttgcatagca tttgcatgga cttgtttgtc ctctgttaac agcagcagtt 6181 ggcctcattc cctttcagac tgaccctgag gaggagccgg gccatggcag gggcagggtg 6241 gacatccctt gtggccctgc cccgccgcac ctgcacctgc acagcccgcg tgggcccgcc 6301 ccgccgcagc tgaagtgcac caccatgggc ccggcccgcg gctcgcggct cgcggctctg 6361 ggcccggttc acctcgtccc ggaagccgag gacgccggcg ggatcggtcc ggacgccgta 6421 gtccggccag ccgaagtact ggaagtgctg caccgtacgc tgtggctcct ccccgcgggg 6481 cagggcctcg cgggcgcagg gtgtacatcg cctgcagggc tgtctgcagg cctgtctgca 6541 ggccacggtg gctgctttct gggccacggt gcaccaggag aacacgcgtg tcatcgtcat 6601 gaccaccagg gagatggagc ggggccgggt aggggtgcgg tgccagtgct cccagtgccc 6661 atcccacccc gtgcatcttc ggctgcccaa ggcccttccc gaccaggcca aggaggctgt 6721 gggacgccgt gggagtgggg aggctcccac agagccccgt ggctgcacgt acacacctgc 6781 gtctctgcag gtcgcagggg cggggtgccg aggtgctgcc agcaaggctg atgcaaagcg 6841 ctcccctcgg aacaagtgtt tccgggactg gccagagctg cccggcagcc aagagttcgg 6901 ccgtgtgcac atgcgcgtcc tcggcaaggg ccaggcccag ggctactgcg tgcgggagct 6961 gcaggtgtgg cggccgggcc aggtgagcct ggcggctgtg gagcgtgcct gctgtcggcc 7021 tgcactggga gaccccacac ctgcctgcat ccaaccccac tgcctttggg ggcttccaca 7081 cccctcaacc caggaggtgc attccaagcc tggacagggg tcactgacgt ggccacattc 7141 tcagccctgg gctggcggcc gctcctccca cacacctctc caactgcagc tttggtctcc 7201 gttgtatacc agagacgccc atttctgctc cgggcagatt acctcgtgtt ccctccagcc 7261 cccgcccagt gtgtgtgggg gggtcctcca ggaccccatg gacccctcac atttggtttt 7321 tccttataaa ataactgtcc tcacagcctg cttcgcccgc ccccagctcc ctcttccctt 7381 ccccaggcac ctgagccacc tggggccatc tcggcgcccc ctccccattt ccttcctcct 7441 cctcctgctc gccttggctc ccgcagcccc tccgcttggg cactcccgga aacccagctg 7501 tgcctcagcc tcctcctccc accctggggt cacactcacc gcttgccccg ctcaggagga 7561 gccacagcgt acggtgcagc acttccagta cttcggctgg ccggactacg gcgtccgggc 7621 cgatcccgcc ggcgtcctcg gcttccggga cgaggtgaac cgggcccaga gcagcaagcc 7681 gcgggccggg cccatggtgg tgcacttcag ctgcggcggg gcgggcccac gcgggctgtg 7741 cagatgcagg tgcggcgggg cggggccacg cgggctgtgc aggtgcaggt gcggcggggc 7801 ggggccacgc gggacgacga gggcggagcc atcgggtggg cgggggcgcc cccgcccccg 7861 ccccccactc tcgtcaaagg ccgcctagtt tgtcctcagt gggggcatcg gatgcacggg 7921 caccatcatc gtgattgaca tcctggtgga cgtcatccgc aggcagggcg agccgctcca 7981 ctctgggtcc ccccgccctg ccctgctata gccccacccc tccgggcgac cccacccctc 8041 cggacgaccc cacccctcag gacgacccca cccctcagga cgaccccacc gctaccggca 8101 agccccgccc ctcatcagca gccccgcccc tgcctgccgg caccttcccc ccatccgtag 8161 cccctcccca agcgcgcttg tccgcagggc tggactgcga caccgacgtc ccgaagacga 8221 tccagctggt ttggcggcag cactggggaa tggtgcagac ggaggctccg tacaagttca 8281 cgtacctggc gctgcagcgg cacatccggg gcgagtaact gcgcctgcgc gagcaggtgg 8341 gggcgtggcc ctgcggggcg tggcctgtgc gggcgtcgcc atggtgaccg gcggcccctc 8401 cccccagcgc gagccgcctc aggagcgcga gaaccaaaac gtgggcgccg ccccccgcta 8461 atcgggttgc agcccccggc tccccgggca tccccggtgt gagtggagcg ccggggccgg 8521 tccggagtcc tctgggaggg actgggacgt gcggggtgca gggctgagcc gctgctccgc 8581 gcgcagaacc ccgcagccct gggacggcga ggacgcgaac ctgcggagcc gcgggtgtct 8641 gaggagccgc agggaacccc cggcctagcc gcgcccgcgt gtggccggag ctgcgggccg 8701 ggactgtgtc caggacagag ccacaagctt gtccccagct cagggaggtc caggggcggc 8761 agagggagcg acaggctgcg aagcccaccg gtgaccacgt gtgaacccgc gtgcgccccc 8821 agctcggcca ctccgtgcgg gtctgccctc accgcagctc cggcctgccg gccctgcctg 8881 ctcccgtggt ctgggatgtg gccccggtga ggacccggcc ccatcaggca cagggtggat 8941 gtctgtggag tgaggtgtgt gtgacatatt catgtgacca cccgtgcagc gtcacgcgcc 9001 tggccctgcc gatgacaagg gtgtgggcct gcgtgggcat gactgtgtgt gtgacacaga 9061 gtgatgttgc tgtgacccgt ggctgcactc cccacatcac cggctttcac agccttccgg 9121 taaagtgctg tgttctccct tctgtgtctt cgctgggacc tggggcaagg gtgggtgtgg 9181 cccccacagc tggagtcagc ttctgtgggg ccttcccgag ccctccccac cctggaccag 9241 aggcccagct ggttggagca ggaagtacct gggctctggg gtcagggatg ggaaggctga 9301 ggaggcctgc gtgagctgga cctggcctgg gccctcctgg ccgtgcctgc ctggtggtgc 9361 aggattcctg gggctgatga cagacggggt agggctgggg ttggcgagcc tcctgccgat 9421 acctcacgta gctgacctct gactcttccc cagccaggct ggccctggga gttgccggag 9481 agtcagtgga tctgcaggct gcacgctggc tgttaccttt gcttctgggt tcccacaggg 9541 gtcatggttc tgtggttctc cagtcaggga ccctagcagg gccatggggc gtgacttcct 9601 ggaggtgtgg cctagtatgg ccacggcaga ggatggggga agagaaaggc cccctttgtc 9661 agcccccggg ctctgaacca agctgaagcc ctccccctgg tccagcctgc cctgccccaa 9721 gtgtcctggg cctctcccca tctccctggg gagcctcaca ttgctgagtc gccagccaac 9781 tccagaaacc cccagcctgt ctgcagccag aggggctggg agttggaccc cctagaacct 9841 tgggcccacc tgtcccagtg gctgctggga gtctaattct gtcagggtat cctctgggtt 9901 gaggctgcag caggggcacc cagggtgagg ccctcttgcc aaagatggat acaaataatt 9961 tattttaaaa ggtacaattc acaaggttgg aggggtagct ggaagtttct gtggttacct 10021 tgcactgggg ggctgccctg cctccactct ctccccacag tccgagggca agatgagcac 10081 ccccacccaa tggcaggacc agccctgcgg ggaaatgtca gcatgagtgg aagcacggca 10141 aggccccttc cttcttggca aggggcttcc ctggcaggca gttcacaggg tgtgtgggtg 10201 ggggggatgc tgaccagctg ctctcctgga cccttcctgt acgagcctgt ttttttttgt 10261 tttgttttga gacagggtct ccctctgtcg cccaggctgg atgcagtggt gcaatcttgg 10321 ctcactgcca cctccacctc cccggttcaa gcagttctcc tgcctcagcc tccccagtag 10381 ctaagaggca cccaccacga tgcccggtta atttttgtat ttttagtaga gatggggttt 10441 caccatgttg gccaggctgg tgtcaaaatc ccgacctcaa gtggtctttc tgcctcagcc 10501 ctccagagtg ctgagatgac aggcgtgagc caccgcgccc ggtgagactg tggttcttgg 10561 aggctttggg gatcctcttg tccaccccgt caggacccag cctggagaat gaggggtgga 10621 caagctaaat ggagcctggt cttggtgggg ccccggtgga gtcctcagag atgccaggct 10681 cctttcgcgt cctcggggac cgacttccag tggctgctgt gcccttgggc cccccagtgg 10741 gggacgcccc atggagctgg gcgagggcgg ctgacctggg cagaggctgc tggccctaat 10801 tatcagtcag aggcccgagg ggggaggcgg ctgtgctggt ggccgggggc cgggggggca 10861 ggggcaggca gcgcaggttc ccggtcttga gcgcgcactg caccggccag agtgccacac 10921 agaagagcat cagcagcagg gcagagacca gtgccatgcg cctccagtcc ctgcagcgcg 10981 cccagcagcg ggccaggcgg c //